Multidisciplinary Research and Education on Big Data + High-Performance Computing + Atmospheric Sciences

Part of NSF Initiative on Workforce Development for Cyberinfrastructure (CyberTraining)

CyberTraining Spring 2020


Introduction

We conducted online training to 26 participants in 8 teams (11 from computing discipline, 10 from physics discipline, 5 from mathematics discipline). Among them, we have 6 undergraduate students (via an REU supplement support), 11 PhD students, 4 postdocs/scientists, 4 junior faculty. Besides the 4 instructors/mentors and 3 dedicated TAs, we also invited 2 external mentors. Each team successfully produced a technical report. Reports are being extended for peer-reviewed conference/journal publications. Evaluation shows the training program is very useful to participants, especially the program provides a unique experience for them to work with peers in other disciplines on a research project.


Projects

Team 1 Project

Team 2 Project

Team 3 Project

Team 4 Project

Team 5 Project

Team 6 Project

Team 7 Project

Team 8 Project


Team 1 Project: Stochastic Precipitation Generation for the Potomac River Basin Using Hidden Markov Models

Team members:
Jonathan Basalyga, Department of Mathematics and Statistics, UMBC
Gerson Kroiz, Department of Mathematics and Statistics, UMBC
Uchendu Uchendu, Department of Information Systems, UMBC
Graduate Assistant:
Reetam Majumder, Department of Mathematics and Statistics, UMBC
Carlos Barajas, Department of Mathematics and Statistics, UMBC
Faculty Mentor:
Matthias K. Gobbert, Department of Mathematics and Statistics, UMBC
Collaborators:
Kel Markert, The University of Alabama in Huntsville / NASA-SERVIR
Amita Mehta, Joint Center for Earth Systems Technology, UMBC
Nagaraj K. Neerchal, Department of Mathematics and Statistics, UMBC
Deliverables:
Implementation Source Code at Github Repository
Presentation Slides
Technical Report
Peer reviewed publication: In preparation

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Team 2 Project: Studying Anomalous Discrepancies between MODIS and CALIOP Cloud Observations

Team members:
Christine Abraham, Department of Mathematics and Statistics, UMBC
Olivia Norman, Department of Physics, UMBC
Erick Shepherd, Department of Physics, UMBC
Graduate Assistant:
Jianyu Zheng, Department of Physics, UMBC
Faculty Mentor:
Zhibo Zhang, Department of Physics, UMBC
Deliverables:
Implementation Source Code at Github Repository
Presentation Slides
Technical Report
Peer reviewed publication: In preparation

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Team 3 Project: Evaluation of Tropical Cloud Simulations between CMIP6 Models and Satellite Observations

Team members:
Achala W. Denagamage, Department of Physics, UMBC
Sahara Ali, Department of Information Systems, UMBC
Neranga Hannadigee, Department of Physics, UMBC
Xin Huang, Department of Information Systems, UMBC
Graduate Assistant:
Pei Guo, Department of Information Systems, UMBC
Faculty Mentor:
Jianwu Wang, Department of Information Systems, UMBC
Deliverables:
Implementation Source Code at Github Repository
Presentation Slides
Technical Report
Peer reviewed publication: In preparation

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Team 4 Project: Use of Deep Learning to Classify Compton Camera Based Prompt Gamma Imaging for Proton Radiotherapy

Team members:
Jonathan Basalyga, Department of Mathematics and Statistics, UMBC
Gerson Kroiz, Department of Mathematics and Statistics, UMBC
Graduate Assistant:
Carlos Barajas, Department of Mathematics and Statistics, UMBC
Faculty Mentor:
Matthias K. Gobbert, Department of Mathematics and Statistics, UMBC
Collaborators:
Paul Maggi, Department of Radiation Oncology, University of Maryland School of Medicine
Jerimy Polf, Department of Radiation Oncology, University of Maryland School of Medicine
Deliverables:
Implementation Source Code at Github Repository
Presentation Slides
Technical Report
Peer reviewed publication: In preparation

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Team 5 Project: Machine Learning for Retrieving Cloud Optical Thickness from Observed Reflectance: 3D Effects

Team members:
Kallista Angeloff, Department of Atmospheric Sciences, University of Washington
Kirana Bergstrom, Department of Mathematical and Statistical Sciences, University of Colorado Denver
Tianhao Le, Division of Geological and Planetary Sciences, California Institute of Technology
Chengtao Xu, Department of Electrical Engineering, Embry-Riddle Aeronautical University, Daytona Beach
Graduate Assistant:
Chamara Rajapakshe, Department of Physics, UMBC
Jianyu Zheng, Department of Physics, UMBC
Faculty Mentor:
Zhibo Zhang, Department of Physics, UMBC
Deliverables:
Implementation Source Code at Github Repository
Presentation Slides
Technical Report
Peer reviewed publication: In preparation

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Team 6 Project: Benchmarking of Data-Driven Causality Discovery Approaches in the Interactions of Arctic Sea Ice and Atmosphere

Team members:
Yiyi Huang, Department of Hydrology and Atmospheric Sciences, University of Arizona
Matthäus Kleindessner, School of Computer Science & Engineering, University of Washington
Alexey Munishkin, Department of Computer Science & Engineering, University of California, Santa Cruz
Debvrat Varshney, Department of Information Systems, UMBC
Graduate Assistant:
Pei Guo, Department of Information Systems, UMBC
Faculty Mentor:
Jianwu Wang, Department of Information Systems, UMBC
Deliverables:
Implementation Source Code at Github Repository
Presentation Slides
Technical Report
Peer reviewed publication: In preparation

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Team 7 Project: Image Segmentation for Dust Detection Using Unsupervised Machine Learning

Team members:
Julie Bessac, Mathematics and Computer Science Division, Argonne National Laboratory
Ling Xu, Department of Mathematics, North Carolina A&T State University
Manzhu Yu, Department of Geography, Pennsylvania State University
Graduate Assistant:
Pei Guo, Department of Information Systems, UMBC
Faculty Mentor:
Aryya Gangopadhyay, Department of Information Systems, UMBC
Collaborators:
Yingxi Shi, Joint Center for Earth Systems Technology, UMBC
Deliverables:
Implementation Source Code at Github Repository
Presentation Slides
Technical Report
Peer reviewed publication: In preparation

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Team 8 Project: Tornado Prediction using Environmental Sounding Data: Comparing Random Forest to CNN

Team members:
Brice Coffer, Department of Marine, Earth, and Atmospheric Science, North Carolina State University
Michaela Kubacki, Department of Mathematics, Middlebury College
Yixin Wen, Cooperative Institute for Mesoscale Meteorological Studies, University of Oklahoma, and NOAA/National Severe Storms Laboratory, Norman, Oklahoma
Ting Zhang, Department of Mathematics and Computer Science, McDaniel College
Graduate Assistant:
Carlos Barajas, Department of Mathematics and Statistics, UMBC
Faculty Mentor:
Matthias K. Gobbert, Department of Mathematics and Statistics, UMBC
Deliverables:
Implementation Source Code at Github Repository
Presentation Slides
Technical Report
Peer reviewed publication: Brice Coffer, Michaela Kubacki, Yixin Wen, Ting Zhang, Carlos A. Barajas, Matthias K. Gobbert, Machine Learning with Feature Importance Analysis for Tornado Prediction from Environmental Sounding Data, PAMM, 10.1002/pamm.202000112, 20, 1, 2021. https://doi.org/10.1002/pamm.202000112.

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Some testimonials from anonymous evaluations

  • “It has offered me a new dimension to consider moving forward in my PhD research. It also equipped me with some of the most important research skills required in my field of Computing, such as Big Data and Machine Learning foundations and quantitative analysis.”
  • “This experience was like no other for me, and it was especially valuable because of the research experience I got out of it. I have always been interested in atmospheric data, so being able to work with that and apply big data and machine learning to it was amazing.”
  • “I learned a lot of techniques which will extend my research fields. Another valuable aspect of taking this cyber training course is that I have the opportunity to work with so many professionals. I learned a lot from them.”
  • “As an undergraduate, the CyberTraining program exposes students to many methods and techniques used in research within the fields of High-Performance Computing, Big Data, and Atmospheric Physics. These tools are extremely valuable and will be used in my future courses and research at UMBC and beyond.”
  • “This is my first time attend an online course and it's a nice experience. The instructors are really fun, friendly and smart.”
  • “It provides us a good opportunity to work on interdisciplinary research project with people from different background.”
  • “As an undergraduate, it was great to see a course not lecture heavy, and more focused on learning via hands-on practice. In many ways, this method of learning can be superior to lecture-based learning, as students tend to retain more of the information. Additionally, this course does an excellent job of combining concepts from several different disciplines. In contrast, many undergraduate and graduate courses are focused on specific topics from an individual domain of science. I wish there were more courses like this offered and I believe there will be in the future.”
  • “The team building was really useful during the first 10 weeks when we were doing the homework. Different persons in the team have different strengths, and we see that clearly during the first 10 weeks. And then we became real teammates while doing the homework. Then when we start with the project development, it really helps.”